Eleanor convertion body question

My BF and I currently have a 67 GTA Fastback that is being converted into the Eleanor. The body kit is installed and by our body shop guy, he said that the parts wont come off. To make a long story short....

On the upper and lower scoops, he cut the holes in them to make them "functional". Well, now you see the old paint and some wires inside of the scoops. My BF does not want to paint it like that and now that the scoops are on, the body guy says they can't be removed to fix the inside.

Is there anything we can do to make the inside more presentable or even close up those holes that are now there???????????????????  

You can spray the inside & wires flat black, that will make the [inside] of the scoop much less noticeable. It sounds like a great project. Good luck.